Search results for "Greedy algorithm"
showing 10 items of 26 documents
Reduced complexity models in the identification of dynamical networks: Links with sparsification problems
2009
In many applicative scenarios it is important to derive information about the topology and the internal connections of more dynamical systems interacting together. Examples can be found in fields as diverse as Economics, Neuroscience and Biochemistry. The paper deals with the problem of deriving a descriptive model of a network, collecting the node outputs as time series with no use of a priori insight on the topology. We cast the problem as the optimization of a cost function operating a trade-off between accuracy and complexity in the final model. We address the problem of reducing the complexity by fixing a certain degree of sparsity, and trying to find the solution that “better” satisfi…
PINCoC: a Co-Clustering based Method to Analyze Protein-Protein Interaction Networks
2007
Anovel technique to search for functionalmodules in a protein-protein interaction network is presented. The network is represented by the adjacency matrix associated with the undirected graph modelling it. The algorithm introduces the concept of quality of a sub-matrix of the adjacency matrix, and applies a greedy search technique for finding local optimal solutions made of dense submatrices containing the maximum number of ones. An initial random solution, constituted by a single protein, is evolved to search for a locally optimal solution by adding/removing connected proteins that best contribute to improve the quality function. Experimental evaluations carried out on Saccaromyces Cerevis…
Deconvolution by Regularized Matching Pursuit
2014
In this chapter, an efficient method that restores signals from strongly noised blurred discrete data is presented. The method can be characterized as a Regularized Matching Pursuit (RMP), where dictionaries consist of spline wavelet packets. It combines ideas from spline theory, wavelet analysis and greedy algorithms. The main distinction from the conventional matching pursuit is that different dictionaries are used to test the data and to approximate the solution. In addition, oblique projections of data onto dictionary elements are used instead of orthogonal projections, which are used in the conventional Matching Pursuit (MP). The slopes of the projections and the stopping rule for the …
A Greedy Algorithm for Hierarchical Complete Linkage Clustering
2014
We are interested in the greedy method to compute an hierarchical complete linkage clustering. There are two known methods for this problem, one having a running time of \({\mathcal O}(n^3)\) with a space requirement of \({\mathcal O}(n)\) and one having a running time of \({\mathcal O}(n^2 \log n)\) with a space requirement of Θ(n 2), where n is the number of points to be clustered. Both methods are not capable to handle large point sets. In this paper, we give an algorithm with a space requirement of \({\mathcal O}(n)\) which is able to cluster one million points in a day on current commodity hardware.
Packing a Trunk
2003
We report on a project with a German car manufacturer. The task is to compute (approximate) solutions to a specific large-scale packing problem. Given a polyhedral model of a car trunk, the aim is to pack as many identical boxes of size 4 × 2 × 1 units as possible into the interior of the trunk. This measure is important for car manufacturers, because it is a standard in the European Union.
How does serendipity affect diversity in recommender systems? A serendipity-oriented greedy algorithm
2018
Most recommender systems suggest items that are popular among all users and similar to items a user usually consumes. As a result, the user receives recommendations that she/he is already familiar with or would find anyway, leading to low satisfaction. To overcome this problem, a recommender system should suggest novel, relevant and unexpected i.e., serendipitous items. In this paper, we propose a serendipity-oriented, reranking algorithm called a serendipity-oriented greedy (SOG) algorithm, which improves serendipity of recommendations through feature diversification and helps overcome the overspecialization problem. To evaluate our algorithm, we employed the only publicly available datase…
M-GRASP: A GRASP With Memory for Latency-Aware Partitioning Methods in DVE Systems
2009
A necessary condition for providing quality of service to distributed virtual environments (DVEs) is to provide a system response below a maximum threshold to the client computers. In this sense, latency-aware partitioning methods try to provide response times below the threshold to the maximum number of client computers as possible. These partitioning methods should find an assignment of clients to servers that optimizes system throughput, system latency, and partitioning efficiency. In this paper, we present a new algorithm based on greedy randomized adaptive search procedure with memory for finding the best solutions as possible to this problem. We take into account several different alt…
Optimal and Greedy Heuristic Approaches for Scheduling and Mapping of Hardware Tasks to Reconfigurable Computing Devices
2020
Executing real-time tasks on dynamically reconfigurable FPGAs requires us to solve the challenges of scheduling and placement. In the past, many approaches have been presented to address these challenges. Still, most of them rely on idealized assumptions about the reconfigurability of FPGAs and the capabilities of commercial tool flows. In our work, we aim at solving these problems leveraging a practically useful 2D slot-based FPGA area model. We present optimal approaches for reconfigurable slot creation, hardware task assignment, and placement creation. We quantitatively compare optimal and heuristics algorithms through simulation experiments and show that the heuristics are rather close …
Urban public transport optimization by bus ways: a neural network-based methodology
2007
This paper describes an approach for planning the introduction of bus lanes into the urban road network, that has been applied to the urban area of Palermo. The proposed modelling tool adopts a multi-agent objective function expressing the trade-off between the interests of diverse stakeholders: the generalized transport cost for car drivers and the travel time for public transport users. The reaction of car traffic to a certain planning scenario has been simulated by the DUE assignment technique and the positive impact of the modal shift on the objective function has been tackled by attaching a suitable weight to the time saving for bus passengers. The rise in the bus travel speed, owing t…
On the Greedy Algorithm for the Shortest Common Superstring Problem with Reversals
2015
We study a variation of the classical Shortest Common Superstring (SCS) problem in which a shortest superstring of a finite set of strings $S$ is sought containing as a factor every string of $S$ or its reversal. We call this problem Shortest Common Superstring with Reversals (SCS-R). This problem has been introduced by Jiang et al., who designed a greedy-like algorithm with length approximation ratio $4$. In this paper, we show that a natural adaptation of the classical greedy algorithm for SCS has (optimal) compression ratio $\frac12$, i.e., the sum of the overlaps in the output string is at least half the sum of the overlaps in an optimal solution. We also provide a linear-time implement…